XXXII Cycle

Publications

Sala, D., Giachetti, A., Luchinat, C., and Rosato, A. A protocol for therefinement of NMR structures using simultaneously pseudocontact shift restraints from multiple lanthanide ions. J.Biomol.NMR 66, 175-185 2016 (IF 3.141)

 

XXXI Cycle

Publications

Polykretis P, Delfino G, Petrocelli I, Cervo R, Tanteri G, Montori G, Perito B, Branca J, Morucci G and Gulisano M. Evidence of immunocompetence reduction induced by cadmium exposure in honey bees (Apis mellifera), Environmental Pollution, 218: 826-834, 2016 (IF 4.839)

 

XXX Cycle

Publications

Hart, C.D., Vignoli, A., Tenori, L., Uy, G, Ta Van, T., Adebamowo, C., Hossain, S.M., Biganzoli, L., Risi, E., Love, R., Luchinat, C., and Di Leo,A., Serum metabolomic profiles identify ER-positive early breast cancer patients at increased risk of disease recurrence in a multicentre population, Clin. Cancer. Res. DOI:10.1158/1078-0432.CCR-16-1153, 2016 (IF 8.738)

Mercatelli, E., Barbieri, L., Luchinat, E., and Banci, L., Direct Structural Evidence of Protein Redox Regulation Obtained by in-cell NMR, BBA - Molecular Cell Research, 1863: 198-204, 2016 (IF 5.019)

Basoglu, A., Tenori, L., Vignoli, A., Yildiz, R. and Baspinar, N., NMR based metabolomics evaluation in calves with acute bronchopneumonia: A new approach for biomarker/s, Metabolomics, 12: 1-10, 2016 (IF 3.661)

Vignoli, A., Rodio, D. M., Bellizzi, A., Sobolev, A., Anzivino, E., Mischitelli, M., Tenori, L., Marini, F., Scrivo, R., Valensini, G., Francia, A., Morreale, M., Ciardi, MR, Iannetta, M., Capanella, C., Capitani, D., Mannina, L., Luchinat, C., and Pietropaolo, V. Nuclear magnetic resonance based metabolomic approach to study urines of chronic inflammatory rheumatic diseases, Anal. Bioanal. Chem. 1-9 DOI: 10.1007/s00216-016-0074-z. 2016 (IF 3.125)

 

XXIX Cycle

Publications

Carlon, A., Ravera, E., Hennig, J., Parigi, G., Sattler, M., and Luchinat, C., Improved Accuracy from Joint X-ray and NMR Refinement of a Protein-RNA Complex Structure, J.Am.Chem.Soc., 138: 1601-1610, 2016 (IF 13.038).

Ravera, E., Ciambellotti, S., Cerofolini, L., Martelli, T., Kozyreva, T., Bernacchioni, C., Giuntini, S., Fragai, M., Turano, P., and Luchinat, C., Solid-state NMR of PEGylated proteins, Angew.Chem.Int.Ed, 55: 1-5, 2016 (IF 11.336).

Uzarska, M. A., Nasta, V., Weiler, B. D., Spantgar, F., Ciofi-Baffoni, S., Saviello, M., Gonnelli, L., Muhlenhoff, U., Banci, L. and Lill, R., Mitochondrial Bol1 and Bol3 function as assembly factors for specific iron-sulfur proteins, Elife 5: e16673, 2016 (IF 8.519).

Carlon, A., Ravera, E., Andralojc, W., Parigi, G., Murshudov, G. N., and Luchinat, C., How to Tackle Protein Structural Data from Solution and Solid State: An integrated Approach, Progress in NMR Spectroscopy, 92-93: 54-70, 2016 (IF 7.237).

Martelli, T., Ravera, E., Louka, A., Cerofolini, L., Hafner, M., Fragai, M., Becker, C. F. W., and Luchinat, C., Atomic-Level Quality Assessment of Enzymes Encapsulated in Bioinspired Silica, Chem. Eur. J., 22: 425-432, 2016 (IF 5.771).

Richichi, B., Baldoneschi, V., Burgalassi, S., Fragai, M., Vullo, A., Akdemir, A., Dragoni, E., Louka, A., Mamusa, M., Monti, D., Berti, D., Novellino, E., Rosa, G. and Supuran, CT., A divalent PAMAM-based matrix metalloproteinase/carbonic anhydrase inhibitor for the treatment of dry eye syndrome, Chem. Eur. J., 5: 1714-1721, 2016 (IF 5.771).

Ravera, E., Cerofolini, L., Martelli, T., Louka, A., Fragai, M. and Luchinat, C., 1H detected solid state NMR of proteins entrapped in bioinspired silica: a new tool for biomaterials, Scientific Reports, 6: 27851-doi: 10.1038/srep27851, 2016 (IF 5.578).

Saccenti, E., Menichetti, G., Ghini, V., Remondini, D., Tenori, L. and Luchinat, C., Entropy-Based Network Representation of the Individual Metabolic Phenotype. J. Proteome Res., 15: 3298-3307, 2016 (IF 5.001).

Andralojc, W., Ravera, E., Salmon, L., Parigi, G., Al-Hashimi, HM. and Luchinat, C., Inter-helical conformational preferences of HIV-1 TAR-RNA from Maximum Occurrence analysis of NMR data and Molecular Dynamics simulations. Phys. Chem. Chem. Phys., 18: 5743-5752, 2016 (IF 4.493).

Bernacchioni, C., Ghini, V., Theil, EC. and Turano, P., Modulating in permeability of the ferritin channels, RSC Advances, 6: 21219-21227, 2016 (IF 3.84).

Ghini V, Saccenti E, Tenori L, Assfalg M and Luchinat C. Allostasis and resilience of the human individual metabolic phenotype. J Proteome Res 14: 2951-2962, 2015.(IF 4.245)

Ghini V, Unger F, Tenori L, Turano P, Juhl H and David KA. Metabolomics profiling of pre and post anesthesia plasma samples obtained via Ficoll separation. Metabolomics 11: 1769-1778, 2015.(IF 3.965)

Andralojc W, Berlin K, Fushman D, Luchinat C, Parigi G, Ravera E and Sgheri L. Information content of long-range NMR data for the characterization of conformational heterogeneity. J Biomol NMR 62: 353-371, 2015.(IF 3.305)

Rinaldelli, M., Carlon, A., Ravera, E., Parigi, G., and Luchinat, C., FANTEN: a new web-based interface for the analysis of magnetic anisotropy-induced NMR data, J Biomol NMR, 61, 21-34, 2015 (IF 3.141).

Pozzi C, Di Pisa F, Bernacchioni C, Ciambellotti S, Turano P and Mangani S. Iron bindind to human heavy-chain ferritin. Acta Crystallogr D Biol Crystallogr 71: 1909-1920, 2015.(IF 2.674)

Bernacchioni, C., Ciambellotti, S., Theil, E. C., and Turano, P., Is His54 a gating residue for the ferritin ferroxidase site?, Biochim.Biophys.Acta, 9639, 47-53, 2015 (IF 2.089)

Bernacchioni, C., Ghini, V., Pozzi, C., Di Pisa, F., Theil, E. C., and Turano, P., Loop Electrostatics Modulates the Intersubunit and Intercage Interactions in Ferritin, ACS Chem Biol., 9, 2517-2525, 2014 (IF 5.356).

Andralojc, W., Luchinat, C., Parigi, G., and Ravera, E., Exploring regions of conformational space occupied by two-domain proteins, J.Phys.Chem.B, 118, 10576-10587, 2014 (IF 3.607).

Theil, E. C., Turano, P., Allegrozzi, M., Ghini, V., and Bernacchioni, C., Coordinating Subdomains of Ferritin Protein Cages with Catalysis and Biomineralization viewed from the C4 Cage Axes, J.Biol.Inorg.Chem., 19, 615-622, 2014 (IF 3.353).

Ravera, E., Carlon, A., and Parigi, G., Pairwise binding competition experiments for sorting hub-protein/effector interaction hierarchy and simultaneous equilibria., J.Biomol.NMR, 60, 29-36, 2014 (IF 3.305).

Castaldo, C., Ciambellotti, S., Pablo-Latorre, R., Lalli, D., Porcari, V., and Turano, P., Soluble variants of human recombinant glutaminyl cyclase, Plos ONE, 8, e71657-, 2013 (IF 3.730).

 

 Communications at conferences listed here

 

XXVIII Cycle

Publications

Hosek, T., Calcada, E. O., Nogueira, M., Salvi, M., Duarte Pagani, T., Felli, I. C and Pierattelli, R., Strucutral and dynamic characterization of the molecular hub E1A from human adenovirus, Chem. Eur. J., 22: 13010-13013, 2016 (IF 5.771).

Luchinat, E., Secci, E., Cencetti, F. and Bruni, P., Sequential protein expression and selective labeling for in-cell NMR in human cells, BBA General Subjects, 1860: 527-533, 2016 (IF 4.381).

Eftekharzadeh, B., Piai, A., Chiesa, G., Mungianu, D., Grcia, J., Pierattelli, R., Felli, I.C. and Salvatella, X., Sequence Context Influences the Structure and Aggregation Behavior of a PolyQ Tract, Biophys. J., 110: 2361-2366, 2016 (IF 3.874).

Cukrov, D., Zemiani, M., Brizzolara, S., Cestaro, A., Licausi, F., Luchinat, C., Santucci, C., Tenori, L., Van Veen, H., Zuccolo, A., Ruperti, B., and Tonutti, P., Extreme Hypoxic Conditions Induce Selective Molecular Responses and Metabolic Reset in Detached Apple Fruit, Front. Plant Sci., 7: 146, 2016 (IF 3.360).

Piai, A., Calcada, E. O., Tarenzi, T., del Grande, A., Varadi, M., Tompa, P., Felli, I. C., and Pierattelli, R., Just a Flexible Linker? The Structural and Dynamic Properties of CBP-ID4 Revealed by NMR Spectroscopy, Biophys. J., 110: 372-381, 2016 (IF 3.874).

Fuccio, C., Luchinat, E., Barbieri, L., Neri, S. and Fragai, M., Algal autolysate medium to label proteins for NMR mammalian cells. J.Biomol.NMR, doi: 10.1007/s10858-016-0026-0: 2016 (IF 3.141).

Piai, A., Gonnelli, L., Felli, I. C., Pierattelli, R., Kazimierczuk, K., Grudziaz, K., Kozminski, W., and Zawadzka-Kazimierczuk, A., Amino acid recognition for automatic resonance assignment of intrisically disordered proteins, J.Biomol.NMR, 2016 (IF 3.141).

Secci, E., Luchinat, E., and Banci, L., The Casein Kinase 2-Dependent Phosphorylation of NS5A Domain 3 from Hepatitis C Virus Followed by Time-Resolved NMR Spectroscopy, Chem.Bio.Chem., 17: 328-333, 2016 (IF 3.088).

Saccenti, E., Suarez-Diez, M., Luchinat, C., Santucci, A., and Tenori, L., Probabilistic networks of blood metabolites in healthy subjects as indicators of latent cardiovascular risk, J.Proteome Res., 14, 1011-1111, 2015 (IF 5.001).

Santucci C, Tenori L and Luchinat C. NMR fingerprinting as a tool to evaluate post-harvest time-related changes of three agricultural products. Food res Intl 75: 106-114, 2015.(IF 3.050)

Santucci C, Brizzolara S and Tenori L. Comparison of frozen and fresh apple pulp for NMR-based metabolomic analysis. Food Analytical Methods 8: 2135-2140, 2015.(IF 1.96)

Brutscher B, Felli IC, Gil-Caballero S, Hošek T, Kümmerle R, Piai A, Pierattelli R and Sólyom Z. NMR Methods for the study of instrinsically disordered proteins structure, dynamics, and interactions: General overview and practical guidelines. Adv Exp Med Biol 870: 122, 2015.

Breydo, L., Reddya, K. D., Piai, A., Felli, I. C., Pierattelli, R., and Uversky, V. N., The crowd you're in with: Effects of different types of crowding agents on protein aggregation, Biochim.Biophys.Acta., 1844, 346-357, 2014 (IF 3.848).

Piai, A., Hošek, T., Gonnelli, L., Zawadzka-Kazimierczuk, A., Kozminski, W., Brutscher, B., Bermel, W., Pierattelli, R., and Felli, I. C., "CON-CON" assignment strategy for highly flexible intrinsically disordered proteins, J.Biomol.NMR, 60, 209-218, 2014 (IF 3.305).

Banci, L., Barbieri, L., Bertini, I., Luchinat, E., Secci, E., Zhao, Y., and Aricescu, A. R., Atomic-resolution monitoring of protein maturation in live human cells by NMR, Nat.Chem.Biol., 9, 297-299, 2013 (IF 14.690).

Banci, L., Barbieri, L., Luchinat, E., and Secci, E., Visualization of redox-controlled protein fold in living cells, Chem.Biol., 20, 747-752, 2013 (IF 5.829).

Bermel, W., Felli, I. C., Gonnelli, L., Kozminski, W., Piai, A., Pierattelli, R., and ZawadzkaKazimierczuk, A., High-dimensionality 13C direct-detected NMR experiments for the automatic assignment of intrinsically disordered proteins, J.Biomol.NMR, 57: 353-361, 2013 (IF 2.845).

Felli, I. C., Piai, A., and Pierattelli, R., Recent advances in solution NMR studies: 13C direct detection for biomolecular NMR applications, Ann.Rep.NMR Spectroscop., 359-418, 2013 (IF 1.667).

Bermel, W., Bertini, I., Gonnelli, L., Felli, I. C., Kozminski, W., Piai, A., Pierattelli, R., and Stanek, J., Speeding up sequence specific assignment of IDPs, J.Biomol.NMR, 53, 293301, 2012 (IF 3.612).

Communications at conferences listed here

 

XXVII Cycle

Publications

Hosek, T., Calcada, E. O., Nogueira, M., Salvi, M., Duarte Pagani, T., Felli, I. C and Pierattelli, R., Strucutral and dynamic characterization of the molecular hub E1A from human adenovirus, Chem. Eur. J., 22: 13010-13013, 2016 (IF 5.771).

Valasatava, Y., Rosato, A., Banci, L. and Andreini, C., Metalpredator: a web server to predict iron-sulfur cluster binding proteomes, Bioinformatics, 32: 2850-2852, 2016 (IF 4.981).

Rosato, A., Valasatava, Y. and Andreini, C., Minimal functional sites in metalloproteins and their usage in strucutral bioinformatics. Int.J.Mol.Sci., 17: 671-DOI: 10.3390/ijms17050671, 2016 (IF 3.257).

Valasatava Y, Andreini C and Rosato A. Hidden relationship between metalloproteins unveiled by structural comparison of their metal sites. Scientific Reports 5: 9486, 2015.(IF 5.578)

Hosek, T., Gil-Caballero, S., Pierattelli, R., Brutscher, B., and Felli, I. C., Longitudinal relaxation properties of 1Hn and 1Há determined by direct-detected 13C NMR experiments to study intrinsically disordered, J.Magn.Reson., 254, 19-26, 2015 (IF 2.315).

Valasatava, Y., Rosato, A., Cavallaro, G., and Andreini, C., MetalS3, a database-mining tool for the identification of structurally similar metal sites, J.Biol.Inorg.Chem., 19, 937-945, 2014 (IF 3.353).

Gil, S., Hosek, T., Solyom, Z., Kümmerle, R., Brutscher, B., Pierattelli, R., and Felli, I. C., NMR studies of intrinsically disordered proteins near physiological conditions, Angew.Chem.Int.Ed., 52, 11808-11812, 2013 (IF 13.734).

Andreini, C., Cavallaro, G., Rosato, A., and Valasatava, Y., MetalS2: a tool for the structural alignment of minimal functional sites in metal-binding proteins and nucleic acids, J.Chem.Inf.Model., 53, 3064-3075, 2013 (IF 4.304).

Calcada, E. O., Felli, I. C., Hosek, T., and Pierattelli, R., The heterogeneous structural behaviour of E7 from HPV16 revealed by NMR spectroscopy, ChemBioChem, 14, 18761882, 2013 (IF 3.944).

Bertini, I., Gallo, G., Korsak, M., Luchinat, C., Mao, J., and Ravera, E., Formation Kinetics and Structural Features of Beta-Amyloid Aggregates by Sedimented Solute NMR, ChemBioChem, 14, 1891-1897, 2013 (IF 3.944).

Communications at conferences listed here

 

XXVI Cycle

Publications

Barbieri, L., Luchinat, E. and Banci, L., Characterization of proteins by in-cell NMR spectroscopy in cultured mammalian cells, Nature Protocols 11: 1101-1111, 2016 (IF 9.67).

Mercatelli, E., Barbieri, L., Luchinat, E., and Banci, L., Direct Structural Evidence of Protein Redox Regulation Obtained by in-cell NMR, BBA - Molecular Cell Research, 1863: 198-204, 2016 (IF 5.019).

Fuccio, C., Luchinat, E., Barbieri, L., Neri, S. and Fragai, M., Algal autolysate medium to label proteins for NMR mammalian cells. J.Biomol.NMR, doi: 10.1007/s10858-016-0026-0: 2016 (IF 3.141).

Barbieri L, Luchinat E and Banci L . Protein interaction patterns in different cellular environments are revealed by in cell NMR. Scientific Reports 5:14456: DOI: 10.1038/srep14456, 2015.(IF 5.578)

Rinaldelli, M., Carlon, A., Ravera, E., Parigi, G., and Luchinat, C., FANTEN: a new web-based interface for the analysis of magnetic anisotropy-induced NMR data, J Biomol NMR, 61, 21-34, 2015 (IF 3.141).

Luchinat, E., Barbieri, L., Rubino, J. T., Kozyreva, T., Cantini, F., and Banci, L., In living cells folding and metal binding of SOD1 fALS mutants is impaired, Nat.Commun., 5, 5502-, 2014 (IF 10.742).

Rinaldelli, M., Ravera, E., Calderone, V., Parigi, G., Murshudov, G. N., and Luchinat, C., Simultaneous use of solution NMR and X-ray data REFMAC5 for joint refinement/detection of structural differences, Acta Cryst.D, D70, 958-967, 2014 (IF 7.232).

Barbieri, L., Luchinat, E., and Banci, L., Structural insight of proteins in sub-cellular compartments: in mitochondria NMR, Biochim Biophys Acta, 1843, 2492-2496, 2014 (IF 3.848).

Banci, L., Barbieri, L., Bertini, I., Luchinat, E., Secci, E., Zhao, Y., and Aricescu, A. R., Atomic-resolution monitoring of protein maturation in live human cells by NMR, Nat.Chem.Biol., 9, 297-299, 2013 (IF 14.690).

Andreini, C., Cavallaro, G., Lorenzini, S., and Rosato, A., MetalPDB: a database of metal sites in biological macromolecular structures, Nucleic Acids Res., 41, D312-D319, 2013 (IF 8.278).

Banci, L., Barbieri, L., Luchinat, E., and Secci, E., Visualization of redox-controlled protein fold in living cells, Chem.Biol., 20, 747-752, 2013 (IF 5.829).

Calcada, E. O., Felli, I. C., Hosek, T., and Pierattelli, R., The heterogeneous structural behaviour of E7 from HPV16 revealed by NMR spectroscopy, ChemBioChem, 14, 18761882, 2013 (IF 3.944).

Bhaumik, A., Luchinat, C., Parigi, G., Ravera, E., and Rinaldelli, M., NMR crystallography on paramagnetic systems: solved and open issues, Cryst.Eng.Comm., 15, 8639-8656, 2013 (IF 3.879).

Ferella, L., Luchinat, C., Ravera, E., and Rosato, A., SEDNMR: A web tool for optimizing sedimentation of macromolecular solutes for SSNMR, J.Biomol.NMR, 57, 319-326, 2013 (IF 2.845).

Luchinat, C., Parigi, G., Ravera, E., and Rinaldelli, M., Solid state NMR crystallography through paramagnetic restraints, J.Am.Chem.Soc., 134, 5006-5009, 2012 (IF 9.019).

Andreini, C., Cavallaro, G., and Lorenzini, S., FindGeo: a tool for determining metal coordination geometry, Bioinformatics, 28, 1658-1660, 2012 (IF 4.877).

Bertini, I., Ferella, L., Luchinat, C., Parigi, G., Petoukhov, M. V., Ravera, E., and Rosato, A., MaxOcc: a web portal for Maximum Occurence Analysis, J.Biomol.NMR, 53, 271-280, 2012 (IF 3.612).

Bertini, I., Case, D. A., Ferella, L., Giachetti, A., and Rosato, A., A grid-enable web portal for NMR structure refinement with AMBER, Bioinformatics, 27, 2384-2390, 2011 (IF 4.877).

Banci, L., Barbieri, L., Bertini, I., Cantini, F., and Luchinat, E., In-cell NMR in E.coli to monitor maturation steps of hSOD1, Plos ONE, 6, e23561-, 2011 (IF 4.411).